PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G31622
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 63aa    MW: 6765.85 Da    PI: 10.7659
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G31622genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-211452947
                 HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
       SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                  qvtfs+Rr g++KKA ELSv Cdaevav++fs tgkl 
  Ro05_G31622 14 SQVTFSRRRRGLFKKAGELSVHCDAEVAVVVFSATGKLS 52
                 69***********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    
MTTAIKIENL PVASQVTFSR RRRGLFKKAG ELSVHCDAEV AVVVFSATGK LSVSSSSSRL  60
IDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-17MIKC_MADS family protein