PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G31624
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 68aa    MW: 7375.51 Da    PI: 11.3437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G31624genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.8e-211352847
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                   qvtfskRr g++KKA ELSv Cdaevav++ s tgk+y
  Ro05_G31624 13 ASQVTFSKRRRGLFKKARELSVHCDAEVAVVVSSATGKIY 52
                 469***********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    
MTTAITIENM PVASQVTFSK RRRGLFKKAR ELSVHCDAEV AVVVSSATGK IYGSSSNSSK  60
TRRKSITV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.25e-15MIKC_MADS family protein