PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G31625

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 201aa MW: 22380.2 Da PI: 4.5643

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G31625	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.3	1.1e-19	15	51	10	46
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 vtfskRr g++KKA ELSv Cdaevav++fs tgk Ro05_G31625 15 PVTFSKRRRGLFKKARELSVHCDAEVAVVVFSATGKP 51 59*********************************85 PP
2	K-box	45.8	2.6e-16	94	169	23	98
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +L+ke+ re+R++ G+dLe+L++ eLq+Le+++e +l+++ ++K+e +++qi l k l e+n++L++++ Ro05_G31625 94 RLNKELADSIRELRQMEGQDLEELNIDELQKLEDAIEGGLSRVLKTKDERIMSQIMALETKGAGLIEANNQLQQRI 169 5666665555788************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MTTAITIENL PVASPVTFSK RRRGLFKKAR ELSVHCDAEV AVVVFSATGK PYGSSSNSSM 60 EDVIARYKLH TKDVEKLDQQ PCPELQLENN DGIRLNKELA DSIRELRQME GQDLEELNID 120 ELQKLEDAIE GGLSRVLKTK DERIMSQIMA LETKGAGLIE ANNQLQQRIW MLSNGASGVA 180 LESEISSAEE DHGDYMDNTK N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	5e-52	MIKC_MADS family protein