PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G31626
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12545.9 Da    PI: 11.1432
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G31626genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.9e-2365110146
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                  k+i+n   rqvtfskRr g+lKKA ELSvLCd e aviifs tgkl
  Ro05_G31626  65 KKIDNLPARQVTFSKRRRGLLKKAGELSVLCDCEFAVIIFSATGKL 110
                  6899*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    
MGKTRKENSF LEQAPNTRSK DETPNKLVLL FHLQLQVPQR PRKLLASSSC SLAGMKTTRE  60
KIKIKKIDNL PARQVTFSKR RRGLLKKAGE LSVLCDCEFA VIIFSATGKL F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-20MIKC_MADS family protein