PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G02847
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 340aa    MW: 38620 Da    PI: 5.7828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G02847genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13130181155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+++P +   + ++ + a+i   A++++k+L+
  Ro06_G02847 130 QRMTHIAVERNRRKQMNEYLSALRSIMPDS---YVQRGDQASIIGGAINFVKELE 181
                  79****************************...9******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MALDAVVFPQ DPFTYTTNKD FYSLLVGNWS YDDLDHHHHQ QLQEASCDFL GNQTDHHLTT  60
TYSSPPSILV SHFDDLQLSN PTPDNGPTDH FDQAQFQLPL VEDAVTTTTK TRPKRRRAKS  120
KKNEEEIENQ RMTHIAVERN RRKQMNEYLS ALRSIMPDSY VQRGDQASII GGAINFVKEL  180
EQQVQFLGAQ KQNDNNSDLP FSDFFSFPQY SSTSTSTAHQ TGHDHRYDSD QRPAVEHKYA  240
ADMNVSTVAA DIEVTMVESH ANLKVRSKRV PKQLLKFVSG LHTLRLTVLH LNVATVDEIV  300
LYSLSVKVEE DCALTSVDEI ATAVYQMLAR IQEEAMLHLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131142RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-66bHLH family protein