PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G02860

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YC

Protein Properties

Length: 216aa MW: 24592.9 Da PI: 6.301

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G02860	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179	4.4e-56	33	136	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql+sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi Ro06_G02860 33 QLQSFWTNQfqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 130 89****99999********************************************************************************* PP NF-YC 96 vprdel 101 vpr++l Ro06_G02860 131 VPREDL 136 *987 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MQSNSQSAGA QLAQHQLAYQ HIHQQQQQQL QQQLQSFWTN QFQEIEKVTD FKNHSLPLAR 60 IKKIMKADED VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR 120 TDIFDFLVDI VPREDLKDEV LASIPRGTVS VGAADALPPY CYMPPQHGTQ VGAPGMIMGK 180 PMLDPSMYGQ QSHPYMAPQM WPQAPEQQQQ QSPSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	112	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	2e-83	NF-YC family protein