PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G03742

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 487aa MW: 52710.9 Da PI: 5.2074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G03742	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	303	345	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+++L Ro06_G03742 303 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLREL 345 79*******************66......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MLPISSGAVW MDREEEDAVC SWTSSMRNNN ENSSLGASLC NLKSMLEGEW YMNPPPHQND 60 IIGFSSNPAA ENTFHLQPMD SSASCSPSRA FTLANPKSCF SSLLNTNHFD NLGCDSGFLA 120 QFQQGNDALM DFAAFNSHSQ VAATPALSSS TEFPTNQLPP VSDNTGFESS GGALLLNRAK 180 LQMGGGGAQP TLFQKRAALG QNSSGSSGCD KLGNLEISGP SFSGLGLGLE KKRKRNSESE 240 MDVSGLNYYD SDEFNEYGQA EEEEEENNAA GGGGGGSNSN AISSVTDGDY KRKKNGLPAK 300 NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID YLRELLQRIN DLHNELESSA 360 APPSTSFHPL TPTPLTIPCR TRVKEELCPT SLASPKSQQP PAKVDVQIRE SGGAVNIHMF 420 CARRPGLLLS TMTALDSLGL DIQQAVISCF NGFALDVFRA EQCRETHFLP EQIRAVLLDS 480 AGFHGMM

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MLPISSGAVW MDREEEDAVC SWTSSMRNNN ENSSLGASLC NLKSMLEGEW YMNPPPHQND  60
IIGFSSNPAA ENTFHLQPMD SSASCSPSRA FTLANPKSCF SSLLNTNHFD NLGCDSGFLA  120
QFQQGNDALM DFAAFNSHSQ VAATPALSSS TEFPTNQLPP VSDNTGFESS GGALLLNRAK  180
LQMGGGGAQP TLFQKRAALG QNSSGSSGCD KLGNLEISGP SFSGLGLGLE KKRKRNSESE  240
MDVSGLNYYD SDEFNEYGQA EEEEEENNAA GGGGGGSNSN AISSVTDGDY KRKKNGLPAK  300
NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID YLRELLQRIN DLHNELESSA  360
APPSTSFHPL TPTPLTIPCR TRVKEELCPT SLASPKSQQP PAKVDVQIRE SGGAVNIHMF  420
CARRPGLLLS TMTALDSLGL DIQQAVISCF NGFALDVFRA EQCRETHFLP EQIRAVLLDS  480
AGFHGMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	311	KRKKNGLPAKNLMAERRRRKK
2	292	312	KRKKNGLPAKNLMAERRRRKK
3	305	312	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-116	bHLH family protein