PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G03753

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

DBB

Protein Properties

Length: 231aa MW: 25697.3 Da PI: 8.7241

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G03753	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.3e-08	5	45	6	40
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++k + l+C+ + lC C + +H+ Ht++ Ro06_G03753 5 CQVCNSKVAALYCKADLAKLCLLCDQDIHSAnalslrHTRS 45 *****************************668899999876 PP
2	zf-B_box	16.6	1.6e-05	45	76	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+++ + ++ C++ + lC++C ++H Ro06_G03753 45 SQVCDNCRAQAASVVCFTHNISLCQTCDRHSH 76 689**************************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGSWCQVCNS KVAALYCKAD LAKLCLLCDQ DIHSANALSL RHTRSQVCDN CRAQAASVVC 60 FTHNISLCQT CDRHSHCSSA DRTPVQGFTG CPSSMELASV LGFDLGSQAQ NFNLSLDDDH 120 NKLIKQSLGR PKDEVYEQLV EMRMRALALS AQQQQQVEDA ASYSFISSDQ ARRPTPGQVL 180 ASEIHLNSNI EVVMDGRRSR CNAILRYNKK KKKKKKKTSR QADIIYIARA L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	215	KKKKKKK
2	209	217	KKKKKKKKK
3	210	216	KKKKKKK
4	211	217	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-25	CO-like family protein