PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G03769
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 705aa    MW: 77705.4 Da    PI: 6.1229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G03769genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.62.2e-1343407041374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav+++d  la+++L +l++ +s  gd+mqR+aa+fteAL+arla + ++  +a +p++ s  + ns e l+++++ ++++P++kf+h+
  Ro06_G03769 340 LVHLLLACAEAVAKEDYMLARRYLHHLNQVVSALGDSMQRVAACFTEALSARLAATLTTNPSASAPKPFSpfPPNSLEILKIYQIVYQACPYVKFAHF 437
                  68*****************************************************66555555555444411456*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvgs      e+++etg+ L+++A +l+vpfef++ v ++ledl+++++
  Ro06_G03769 438 TANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGS----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLKPHMF 530
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn v +lhr++    +l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++
  Ro06_G03769 531 NRRIGEALAVNTVNRLHRVP--GNCLG----NLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAP 622
                  *******************9..44444....5****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+lekWr+ +e  GFk+vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Ro06_G03769 623 EIRNIVACEGAERTERHERLEKWRKVMEGKGFKSVPLSANAVTQSKILLGLYSCDGYRMTEDKGCLLLGWQDRSIMAASAWR 704
                  *********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    
MMMNSLGGSS MGSIKSENSC SDFKPTSPNE STTISEPPKK ATCTTTTTAS DLMEQSTNSL  60
TPPSLNFPSL KFELDGDVEV ESPDHSIWES LFSEQFDTDF MVLSPVANNL PNSPQRGGGA  120
FGYNGQAMQG QTSLSGCSPP RFGSSPLGAF SRDNSKGKGL SPLRRVFNSP VNYIQQEPEN  180
LQSLPPASIE DFLDDYQRDG FVAAYNNPNL NPTTTCTSNM SSNSSSQSYH NPMDCNMSNT  240
MQNPSRFSRS VSETSLGTAC NSQMTQESRG GGAPYHHMGS NCGAPLSQQL MHERQQEKQQ  300
HMQMHPQKQH HHNNLNYNNM MAPSLPPVAP EPEQDSGLQL VHLLLACAEA VAKEDYMLAR  360
RYLHHLNQVV SALGDSMQRV AACFTEALSA RLAATLTTNP SASAPKPFSP FPPNSLEILK  420
IYQIVYQACP YVKFAHFTAN QAIFEAFESE ERVHVIDLDI LQGYQWPAFM QALAARSGGA  480
PFLRITGVGS CIEAVKETGR CLTELALSLH VPFEFHAVGE QLEDLKPHMF NRRIGEALAV  540
NTVNRLHRVP GNCLGNLLGM IRDQAPNIVT LVEQEASHNG PYFLGRFLEA LHYYSAIFDS  600
LDATFPPDSA QRAKVEQYIF APEIRNIVAC EGAERTERHE RLEKWRKVME GKGFKSVPLS  660
ANAVTQSKIL LGLYSCDGYR MTEDKGCLLL GWQDRSIMAA SAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-94GRAS family protein