PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G04811

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 469aa MW: 52700.1 Da PI: 9.846

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G04811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.4e-15	110	159	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++mg +R +k+c +rw +yl Ro06_G04811 110 RQRWQPEEDALLRAYVKQYGPKEWSLVSQRMGqsINRDPKSCLERWKNYL 159 89******************************99**********97 PP
2	Myb_DNA-binding	37.9	4.1e-12	165	209	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l vd+ +++G++ Wk+Ia++++ gRt+k + +w + Ro06_G04811 165 KGSLTPEEQSLVVDLQAKYGNK-WKKIAAELP-GRTPKRLGKWWEVF 209 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MLQFHQACLF FYCRVKRVSL AAPTTVNLTG STPILVSSLF LQLHALSVLF LDSSYVTHSV 60 TRAWNRTSHP SNPNKPNRIG WGVREVATRV IQSQQPAASR SRNGAEMKER QRWQPEEDAL 120 LRAYVKQYGP KEWSLVSQRM GQSINRDPKS CLERWKNYLK PGLKKGSLTP EEQSLVVDLQ 180 AKYGNKWKKI AAELPGRTPK RLGKWWEVFR EKQLKQLTKQ KVGASQASTA ASSSSTHLSP 240 DGNIPVSGIA SPEKAAQGPY DHILETFAEK YVQPKLYALP TMMSEPDPLL SLGSVGSTTT 300 TPPSGLPPWM NPPSATSSTS STTPSPSVSL SISPSDPGYD PDPARLQMGT LLQCCKEVEE 360 GRQSWLQHKK EATWRLSRLE QQLESEKARK RREAMEEVEA KIRCMREEEM SFMGRIESDY 420 REQMSVLHRE AETKEAKLVE AWCSKHVKLA KIVDQIGAHS HNTHATHCL

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MLQFHQACLF FYCRVKRVSL AAPTTVNLTG STPILVSSLF LQLHALSVLF LDSSYVTHSV  60
TRAWNRTSHP SNPNKPNRIG WGVREVATRV IQSQQPAASR SRNGAEMKER QRWQPEEDAL  120
LRAYVKQYGP KEWSLVSQRM GQSINRDPKS CLERWKNYLK PGLKKGSLTP EEQSLVVDLQ  180
AKYGNKWKKI AAELPGRTPK RLGKWWEVFR EKQLKQLTKQ KVGASQASTA ASSSSTHLSP  240
DGNIPVSGIA SPEKAAQGPY DHILETFAEK YVQPKLYALP TMMSEPDPLL SLGSVGSTTT  300
TPPSGLPPWM NPPSATSSTS STTPSPSVSL SISPSDPGYD PDPARLQMGT LLQCCKEVEE  360
GRQSWLQHKK EATWRLSRLE QQLESEKARK RREAMEEVEA KIRCMREEEM SFMGRIESDY  420
REQMSVLHRE AETKEAKLVE AWCSKHVKLA KIVDQIGAHS HNTHATHCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-56	MYB family protein