PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G04812
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family RAV
Protein Properties Length: 306aa    MW: 35394.1 Da    PI: 6.3524
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G04812genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.3e-132169155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a ++++g
  Ro06_G04812 21 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNGEEEAAKAYDIASLRFRG 69
                 78****9888.8*********3.....5**********************99997 PP
2B394.47.7e-30146247198
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  f+kvltpsdv++++r+v+pk+ ae+h    +++++++ l +ed  g++W+++++++ +s++yvltkGW +Fvk++++k+gD+v F+ +++ ++++l++
  Ro06_G04812 146 FEKVLTPSDVGRLNRFVIPKQQAEKHfplIESEAKGVLLNFEDDLGNVWRFRYCFWSSSQSYVLTKGWTRFVKEKKVKAGDVVRFHGSSKgEDKKLFI 243
                  99**************************95567899**************************************************997779998888 PP

                  EEE- CS
           B3  95 kvfr 98 
                    + 
  Ro06_G04812 244 ECRP 247
                  8775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDLMSCFNEG ASDSNSKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NGEEEAAKAY  60
DIASLRFRGL DPITDFKQSS WSTIIDDRED ETLFLQSHSK VEIVDMLRKH SYANELELFK  120
HNNGGKRIKY CHIDLMDLHI EKEWLFEKVL TPSDVGRLNR FVIPKQQAEK HFPLIESEAK  180
GVLLNFEDDL GNVWRFRYCF WSSSQSYVLT KGWTRFVKEK KVKAGDVVRF HGSSKGEDKK  240
LFIECRPRNI DDEVSGFPEV PSQVDEPLVT PVQDHDGVVR LFGVNIVETC NSCMVDDRTF  300
HCLQYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.19e-98RAV family protein