PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G04853

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 396aa MW: 43723.5 Da PI: 5.4053

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G04853	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.8	8e-07	17	58	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ ++ +lC C ++H H++ Ro06_G04853 17 RICDTCRAAACTVYCRADSAYLCSGCDATIHAAnrvasrHER 58 79****99*******************55567777765 PP
2	zf-B_box	29.5	1.6e-09	59	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC C +H+ H++vp+ Ro06_G04853 59 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 104 689***************************668999999997 PP
3	CCT	70.3	5e-24	327	370	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Ro06_G04853 327 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 370 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MLKEESNDAA AGNSWPRICD TCRAAACTVY CRADSAYLCS GCDATIHAAN RVASRHERVW 60 VCEACERAPA AFLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGF HHCPPATDPG 120 GQIIVESTLA DTTEDGLDEA MDEEDEDEAA SWLLLNPLKN SNANNTNTNN NPSNNNNGFF 180 FGVEVDDYLD LVEYNSSSCA DQNQFSTSSA TNDQHNQYAV PHKISYGGDS VVPVQYGDGK 240 VTQMQMQQQH KHNFHQLGME YESSKAAYSY DGSITHTVSV SSMDVGVVPD STMNDMSVSH 300 PRTPKGTIDL FNGPTIQMPT QLSPMDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP 360 RIKGRFAKRT DIEVEVDQMF STSLMGETGY GIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MLKEESNDAA AGNSWPRICD TCRAAACTVY CRADSAYLCS GCDATIHAAN RVASRHERVW  60
VCEACERAPA AFLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGF HHCPPATDPG  120
GQIIVESTLA DTTEDGLDEA MDEEDEDEAA SWLLLNPLKN SNANNTNTNN NPSNNNNGFF  180
FGVEVDDYLD LVEYNSSSCA DQNQFSTSSA TNDQHNQYAV PHKISYGGDS VVPVQYGDGK  240
VTQMQMQQQH KHNFHQLGME YESSKAAYSY DGSITHTVSV SSMDVGVVPD STMNDMSVSH  300
PRTPKGTIDL FNGPTIQMPT QLSPMDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP  360
RIKGRFAKRT DIEVEVDQMF STSLMGETGY GIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-122	CO-like family protein