PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G04867
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 118aa    MW: 14074.2 Da    PI: 5.2376
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G04867genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind31.45.1e-102488265
                  HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE- CS
  HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkv 65
                  F+++l+++le ++l++lisw+ ++   f v d++ f++ v+p++F    +f+ F + L + gFk+ 
   Ro06_G04867 24 FIRQLFDVLEMDNLRDLISWNhNDDCRFTVRDKDLFSN-VIPTHFTgVGSFNRFEQMLRIHGFKRY 88
                  9********************777799***********.9999997357899999999****9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MDEVEVKEEP VELEAEVPPQ PILFIRQLFD VLEMDNLRDL ISWNHNDDCR FTVRDKDLFS  60
NVIPTHFTGV GSFNRFEQML RIHGFKRYGL EFWHKDRMLC RDRPLLLPVI KKEPAFAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-06HSF family protein