PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G05514

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 539aa MW: 61609.4 Da PI: 5.9344

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G05514	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw++yl Ro06_G05514 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	53	7.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE+e++v++++ lG++ W++Ia+ ++ gRt++++k++w++ Ro06_G05514 67 RGNYTREEEEIIVRLHENLGNK-WSAIAAQLQ-GRTDNEVKNHWHTN 111 899*****************.*****.*********986 PP
3	Myb_DNA-binding	44.7	3.1e-14	283	330	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l +++ +G +W+ +++ g+ R++k+c++rw +yl Ro06_G05514 283 KGAWSVEEDDKLRAYIQTHGHWNWRQLPQYAGLSRCGKSCRLRWINYL 330 79****************99**********************97 PP
4	Myb_DNA-binding	50.4	5.3e-16	336	380	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+eE l++++++qlG++ W+ Ia++++ gRt++++k++w+++ Ro06_G05514 336 RGDYTEEEKALIIKLHEQLGNK-WSMIAAKLQ-GRTDNEIKNYWHTH 380 7899****************.*****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MVRTPCCDER GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWLNY 60 LRPNIKRGNY TREEEEIIVR LHENLGNKWS AIAAQLQGRT DNEVKNHWHT NLKKRFMMNK 120 HKGSSVSLTH DDHQEQTEVP KSSEQKTAAA DLPNAKTTAD QIPQTDYLDY AELWSPQPSS 180 SEVSSMTTDT AVAITGADGL VVEDNATSAA METIYADFSD DFWTEPFLAD NFYYPSGFYT 240 PLMEPEFLYP LFDGDFLYGS EQQHQGVLKM VRAPFYDKTG VKKGAWSVEE DDKLRAYIQT 300 HGHWNWRQLP QYAGLSRCGK SCRLRWINYL RPGVKRGDYT EEEKALIIKL HEQLGNKWSM 360 IAAKLQGRTD NEIKNYWHTH IKKKDKRHEF NRTSSGQEEL KDHQEQSSYD HEHSSSPSES 420 STSQSNCASD HNILESSPFL SAVLNNSSPS STCKSSTEYS SLSSPPPVST VFMNCHADQG 480 TDLASSSETM IPDQNLCPGD FWTEPFLRVD MDSSSSSSYV SFYDDGMDLF YQVMPTLQE

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MVRTPCCDER GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TREEEEIIVR LHENLGNKWS AIAAQLQGRT DNEVKNHWHT NLKKRFMMNK  120
HKGSSVSLTH DDHQEQTEVP KSSEQKTAAA DLPNAKTTAD QIPQTDYLDY AELWSPQPSS  180
SEVSSMTTDT AVAITGADGL VVEDNATSAA METIYADFSD DFWTEPFLAD NFYYPSGFYT  240
PLMEPEFLYP LFDGDFLYGS EQQHQGVLKM VRAPFYDKTG VKKGAWSVEE DDKLRAYIQT  300
HGHWNWRQLP QYAGLSRCGK SCRLRWINYL RPGVKRGDYT EEEKALIIKL HEQLGNKWSM  360
IAAKLQGRTD NEIKNYWHTH IKKKDKRHEF NRTSSGQEEL KDHQEQSSYD HEHSSSPSES  420
STSQSNCASD HNILESSPFL SAVLNNSSPS STCKSSTEYS SLSSPPPVST VFMNCHADQG  480
TDLASSSETM IPDQNLCPGD FWTEPFLRVD MDSSSSSSYV SFYDDGMDLF YQVMPTLQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	6e-56	MYB family protein