PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G05519

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 392aa MW: 43698.9 Da PI: 5.9103

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G05519	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lv++++++G+g+W+ ++ g+ R++k+c++rw +yl Ro06_G05519 34 KGPWTSEEDVILVNYIQEHGPGNWRNLPKNAGLQRCGKSCRLRWTNYL 81 79********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	87	131	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Ro06_G05519 87 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 131 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
KLAPSSSSST KFQVCTPFTS MGRAPCCDKN GLKKGPWTSE EDVILVNYIQ EHGPGNWRNL 60 PKNAGLQRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT 120 DNEIKNYWNT HIRKRLLRMG IDPVTHAPRL DLLDLSSILG SYVSHLNPAA ALLNLSNLLG 180 TQQALNVNPE LLRLVTTLSS LKQGNTQLFS QNNQNQLCNV SQDLQNQLVP SLQSNPQFQN 240 LFQDDFSPDM ANLKQLMQMI NTEGNLPNMS NFSSPVSYSQ ENMVPNSILG TETAVSNLPS 300 YEPSSTSNPT VPELPGNSFF QLPLNNSNVN HDFGFDSVLS TPHSSPTPLN SSGTYNNINS 360 SSTEDERDLE SYCSNLLKFE IPDSTLDIND YM

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

KLAPSSSSST KFQVCTPFTS MGRAPCCDKN GLKKGPWTSE EDVILVNYIQ EHGPGNWRNL  60
PKNAGLQRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT  120
DNEIKNYWNT HIRKRLLRMG IDPVTHAPRL DLLDLSSILG SYVSHLNPAA ALLNLSNLLG  180
TQQALNVNPE LLRLVTTLSS LKQGNTQLFS QNNQNQLCNV SQDLQNQLVP SLQSNPQFQN  240
LFQDDFSPDM ANLKQLMQMI NTEGNLPNMS NFSSPVSYSQ ENMVPNSILG TETAVSNLPS  300
YEPSSTSNPT VPELPGNSFF QLPLNNSNVN HDFGFDSVLS TPHSSPTPLN SSGTYNNINS  360
SSTEDERDLE SYCSNLLKFE IPDSTLDIND YM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-100	MYB family protein