PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G05531
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family E2F/DP
Protein Properties Length: 138aa    MW: 15439.9 Da    PI: 9.5865
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G05531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.57.3e-212693171
      E2F_TDP  1 rkeksLrlltqkflklleksee..givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rk+ksL ll+++f++l+++++     ++l+++a +L        rRRiYD++NVL +++l+++k+kn ++wkg
  Ro06_G05531 26 RKQKSLSLLCSNFVSLYNREDGatSLICLDDAALRL---GD--LRRRIYDVINVLVSIGLLARKSKNTYTWKG 93
                 79****************96655689**********...55..8***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MIEYNCVLGF GSRPLVGFSL RPSDGRKQKS LSLLCSNFVS LYNREDGATS LICLDDAALR  60
LGDLRRRIYD VINVLVSIGL LARKSKNTYT WKGFGAIPNT LKELKEEGLN LTPIPTCNNS  120
PLDETKGEKL RCFLRRIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.12e-25E2F/DP family protein