PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G05615
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 197aa    MW: 22033.3 Da    PI: 8.0001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G05615genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-1065105954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri ++f  L++l+P       +K++ +++Le+A++Y+k L
  Ro06_G05615  65 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAIHYVKFL 105
                  699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MEYYYSTSSD GSNYSSSSVI SNTNTNNING RNNNKDKMTK KGADGHDQKS KNKVKLSTDP  60
QSVAARERRH RISDRFKILQ SLVPGGTKMD TVSMLEEAIH YVKFLKSQIW LHQTMINFAG  120
DDDNQYYDHD PASGNVFQLP AHHGHPVGST IDPHHEQALY YGQNSFVGTS SVQPSIPSMP  180
EYSSFQGPPV TQKITSY