PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G06117

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 362aa MW: 42102.2 Da PI: 9.9809

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G06117	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.3e-16	6	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw +yl Ro06_G06117 6 RQRWRPEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWKNYL 55 89**********************************************97 PP
2	Myb_DNA-binding	37.9	4e-12	61	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Ro06_G06117 61 KGSLTEEEQRLVICLQEKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 105 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MEMKERQRWR PEEDALLRAY VKQYGPREWN LVSQRMNTPL NRDAKSCLER WKNYLKPGIK 60 KGSLTEEEQR LVICLQEKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REQKNSKTVS 120 QPIEEGKYDR ILETFAEKLV KERPAPAYLM ASNGAFLHSE PSPAPSMLPP WLSNSNVTQH 180 VRPPSPSVTL SLSPTVPPSR ASPPIPWLQP DRGSENNFVL SNLPPTGSVP CGENFVISEL 240 VECSRELEEV HRAWAAHKKE ASWRLRRVEL QLESEKACRK REKMDEIEAK VKALREEQKA 300 ALDRIEAEYR EQIAGLRRDA EMKEQKLADQ WSAKHMRLTK FLEQMGSRPR LAEPNGRYYN 360 YI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MEMKERQRWR PEEDALLRAY VKQYGPREWN LVSQRMNTPL NRDAKSCLER WKNYLKPGIK  60
KGSLTEEEQR LVICLQEKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REQKNSKTVS  120
QPIEEGKYDR ILETFAEKLV KERPAPAYLM ASNGAFLHSE PSPAPSMLPP WLSNSNVTQH  180
VRPPSPSVTL SLSPTVPPSR ASPPIPWLQP DRGSENNFVL SNLPPTGSVP CGENFVISEL  240
VECSRELEEV HRAWAAHKKE ASWRLRRVEL QLESEKACRK REKMDEIEAK VKALREEQKA  300
ALDRIEAEYR EQIAGLRRDA EMKEQKLADQ WSAKHMRLTK FLEQMGSRPR LAEPNGRYYN  360
YI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-154	MYB family protein