PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G06742

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 527aa MW: 57337.9 Da PI: 5.3168

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G06742	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l Ro06_G06742 38 KGPWTAAEDSILMEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 85 79******************************************9986 PP
2	Myb_DNA-binding	48.6	1.9e-15	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ T+eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ Ro06_G06742 91 KGSLTPEEERIIIELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 134 6788****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MIMSNSGDGS MDLNEMVAAA QMGSGPHQFH QSIRGLKKGP WTAAEDSILM EYVKKHGEGN 60 WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLTPEEER IIIELHAKYG NKWARMASQL 120 PGRTDNEIKN YWNTRMKRRQ RAGLPIYPHE LQHEATASFH HHQAHLQQQR HNSNSSSSSF 180 SSLLSSSHPR KANYSATPSL SLYDQISFDA PMQNSPSLNY SNPPMTAQFN GNNGGFAIPL 240 SPVSPVSPFG SSSSALFNQT SIPTQTLLTT PSQFYNSGHG GFGNYSLSHS SMIMGTPTYE 300 PMKSELPSNQ TPPYTLAKPA SSANFNGGEG LMEASGNTND YEIETVASQV KRGSGLLDDV 360 LVQAEKMSQN KRSRSGDSSS GESGKDKYIV EEEDESADQE EEEDNVQDES TWKSSGENSA 420 ENQRDGSSSP SIGMKPIEDP LEEMDDDLLS LLNFSSATPV SESWYMGSTS NSASSGMNGA 480 SEVNVSLDIQ QNASTLASPV NTSAAAPDDE VKRSLPPCFW NNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MIMSNSGDGS MDLNEMVAAA QMGSGPHQFH QSIRGLKKGP WTAAEDSILM EYVKKHGEGN  60
WNAVQKNSGL ARCGKSCRLR WANHLRPNLK KGSLTPEEER IIIELHAKYG NKWARMASQL  120
PGRTDNEIKN YWNTRMKRRQ RAGLPIYPHE LQHEATASFH HHQAHLQQQR HNSNSSSSSF  180
SSLLSSSHPR KANYSATPSL SLYDQISFDA PMQNSPSLNY SNPPMTAQFN GNNGGFAIPL  240
SPVSPVSPFG SSSSALFNQT SIPTQTLLTT PSQFYNSGHG GFGNYSLSHS SMIMGTPTYE  300
PMKSELPSNQ TPPYTLAKPA SSANFNGGEG LMEASGNTND YEIETVASQV KRGSGLLDDV  360
LVQAEKMSQN KRSRSGDSSS GESGKDKYIV EEEDESADQE EEEDNVQDES TWKSSGENSA  420
ENQRDGSSSP SIGMKPIEDP LEEMDDDLLS LLNFSSATPV SESWYMGSTS NSASSGMNGA  480
SEVNVSLDIQ QNASTLASPV NTSAAAPDDE VKRSLPPCFW NNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	7e-77	MYB family protein