PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06774
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 94aa    MW: 10758.7 Da    PI: 3.8969
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06774genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-104587145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ ++++E+ l+ + +++ G + W++Ia +++ gRt++++  +w+
      Ro06_G06774 45 KLDFSEDEEFLITRMFNLVGER-WSLIAGRIP-GRTAEEIEKYWN 87
                     5789******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    
MADLDHSSDE SSVDSRVFDT LLADLDQIID YLSLNSGEVT SQDSKLDFSE DEEFLITRMF  60
NLVGERWSLI AGRIPGRTAE EIEKYWNSRY STSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.11e-17MYB_related family protein