PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G06994
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 276aa    MW: 30845.4 Da    PI: 6.6837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G06994genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.5e-09120167455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Ro06_G06994 120 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 167
                  8*************************9....888999999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MDPTAATVPG SAVAGPEQEE PGLETLQFRE EIQQHSPETG TVPSNSGANV EKVKSEPAET  60
DSNPNSSLET KNNQRSSLKR KDREKKVKVS TKKNKTEVKE DAEKIPYVHV RARRGQATDS  120
HSLAERARRE KINARMKLLQ ELVPGCNKIS GTALVLDEII NHVQSLQRQV EFLSMRLATV  180
DPRIDSNLDH LLATESLSLM QSNFSNMVPP LMWPEFPING NRQQYQQQWH FDALHQPGWG  240
REEDNHTFVT PEASLISCNS SANSASLHTG HVKTEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-79bHLH family protein