PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G07563
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 300aa    MW: 33754.2 Da    PI: 6.9102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G07563genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.7e-141151343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 ie +s r+ tf kRr+g+l K + L++LCd+ +++ii++++
  Ro06_G07563 11 IEHNSSRKATFQKRREGLLLKVHQLCILCDVPALLIIYGPN 51
                 89999**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MPRAKVKLGW IEHNSSRKAT FQKRREGLLL KVHQLCILCD VPALLIIYGP NSNEPTVWPN  60
HPEVERLLRR YLSLPKLERE KKAKDQETYM EERVPRRPGQ MQAERKKILQ KSSQMELNDA  120
IYQIERKGKF YHEFSNKEQT DLNLLRSKMD RIRQLIDYCE KNPHPVALEV GEAYEHIMSQ  180
IGRNPTDSFY DNIAANDMGM PLAANGSHYG VGGMKWAPYG VESDGTTSDQ MGMNHLGFGW  240
DMSLNGDNNW GGSNVGCTHI WGNLPHQGDL GGGLPPGLFG DHNAGNDAGL PPGLFGGMDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.29e-24M-type_MADS family protein