PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G07564
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 230aa    MW: 26424.2 Da    PI: 9.5826
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G07564genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.71.9e-101158349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                 i+ + +r+ tf kR +g+l K eEL +L d+ + vii+ ++ ++l  +
  Ro06_G07564 11 IKHSNQRKNTFRKRSQGLLQKVEELTILWDVTAFVIIYNPDtNQLTVW 58
                 788999********************************9852566666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MPRSGVKLRW IKHSNQRKNT FRKRSQGLLQ KVEELTILWD VTAFVIIYNP DTNQLTVWPD  60
RQIVEQMLER FHRLPDDERT RKMVNQETYL MEKVAKLEEK LKKTHTKTMN LLLSQIYEGN  120
KPFSEFEQKE LTDLDLFLRA QLRKIEELIN FKEGDNVTVP LDLGLSLRVN GSNNFGNGGN  180
ITGDGTEMGF GFTGPQSSRN NVGNYLGLSL MPYNPNIGSG WSTSGVLFII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-18M-type_MADS family protein