 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ro06_G08203 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
| Family | GeBP | ||||||||
| Protein Properties | Length: 303aa MW: 35246.2 Da PI: 6.6912 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 76 | 6.6e-24 | 104 | 198 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97
+r+ws+eDe+ lL+ ++d++++ + ++ fy+ v+ + + +++k+ lveK+ rLKkK +++v+k k+g+e++f+++hd+ ife+s+++W
Ro06_G08203 104 RKRVWSKEDELELLKNFLDYRMRPR--AAGETASFYDEVNPKFKEQFNKRKLVEKLGRLKKKHRNMVNKmmNKNGQEFRFRNPHDKAIFEISHRVWA 198
68******************88877..5689**************************************98899**********************6 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 303 aa Download sequence |
MPWPLLKWIM YSSSSSSSSE YEEFDDVKDD GISKKGDDHH HPNKQAEQNH ETHEGYGDDD 60 VSYEPQEDET SNSSDYTFTI TEPRRKRRRI DNKEAATTVR VKRRKRVWSK EDELELLKNF 120 LDYRMRPRAA GETASFYDEV NPKFKEQFNK RKLVEKLGRL KKKHRNMVNK MMNKNGQEFR 180 FRNPHDKAIF EISHRVWAES PLCNIQEKNV VVDSHDVGSK TTSMNNGDDE GNNDVRGLII 240 GLATNPIPLS LSNYGGRGGE VVDEKWREQQ ILELEAYSKR LELVQHQVKA ALDDLRSNEV 300 FGL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 84 | 106 | RRKRRRIDNKEAATTVRVKRRKR |
| 2 | 85 | 89 | RKRRR |
| 3 | 85 | 107 | RRKRRRIDNKEAATTVRVKRRKR |
| 4 | 86 | 90 | KRRRI |
| 5 | 86 | 108 | RRKRRRIDNKEAATTVRVKRRKR |
| 6 | 87 | 109 | RRKRRRIDNKEAATTVRVKRRKR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G04930.2 | 3e-23 | GeBP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|