PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08206

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 368aa MW: 42682.8 Da PI: 8.198

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08206	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.8	2.5e-12	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i++k +vt skRr+g++ KA E + ++a +a+i fs+ +k +++ Ro06_G08206 9 KKISDKKTLKVTCSKRRKGLFRKADEFCSKTGAHIAIITFSPGDKPFTF 57 689***************************************9998887 PP
2	SRF-TF	33.5	5.2e-11	211	253	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+i+ k + tf kRr+ ++ KA EL+ +++++a+i+fs+ Ro06_G08206 211 KKISHKNALNATFKKRRQCLFHKADELCSKTGTQIAIIVFSPA 253 56888888899******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGKRKIEIKK ISDKKTLKVT CSKRRKGLFR KADEFCSKTG AHIAIITFSP GDKPFTFGHP 60 SVESIIDRYE LCAQSSNDKE IPDVDLDFEA SQERREEVGL SEEENESLER DEVSMSDDEK 120 ELLEGMGLND LKQYARWVED QRNKLIRKIE NRKRGDSCTV DWLGMIKGST TVDLKRFGTN 180 MREEMELEEM KKRESCTKDF LIMGLKKIEI KKISHKNALN ATFKKRRQCL FHKADELCSK 240 TGTQIAIIVF SPAIHVRPPL GRSRHRSVID EEKVESWLDK PIEGMGLDEL EQYARWVEDE 300 LEETKMRKSC TKNFLANWRK GGFVTSIILY KEIMDFGLSY IYTSFTQKNQ PRLGPPNFVS 360 RETNQVDN

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGKRKIEIKK ISDKKTLKVT CSKRRKGLFR KADEFCSKTG AHIAIITFSP GDKPFTFGHP  60
SVESIIDRYE LCAQSSNDKE IPDVDLDFEA SQERREEVGL SEEENESLER DEVSMSDDEK  120
ELLEGMGLND LKQYARWVED QRNKLIRKIE NRKRGDSCTV DWLGMIKGST TVDLKRFGTN  180
MREEMELEEM KKRESCTKDF LIMGLKKIEI KKISHKNALN ATFKKRRQCL FHKADELCSK  240
TGTQIAIIVF SPAIHVRPPL GRSRHRSVID EEKVESWLDK PIEGMGLDEL EQYARWVEDE  300
LEETKMRKSC TKNFLANWRK GGFVTSIILY KEIMDFGLSY IYTSFTQKNQ PRLGPPNFVS  360
RETNQVDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-22	M-type_MADS family protein