PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G08259
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 303aa    MW: 32542.3 Da    PI: 6.2375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G08259genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10177221554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Ro06_G08259 177 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 221
                  99***********************8.....6****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MAGNPPEGLG DDFFEQILAV PSTYSGSGSG ADSAGGYGDV GTMPMVLQLG SGTGSSSASG  60
GYRGVGSVGM GMGMPLGLNL EQGFLGQDRF RDEVEPNTNT SNNNTNSSNE RDSIHMTSLF  120
PAFGHLQNHS VRPTPPPPQP HQQFHSQPAP GPAAAVNHPP AIRPRVRARR GQATDPHSIA  180
ERLRRERIAE RMKALQELVP SCNKTDRAAM LDEIVDYVKF LRLQVKGEGI EGGTNNQQAW  240
EKWSNDGTEQ QVAKLMEEDV GAAMQYLQSK ALCIMPISLA PAIFRTHQPD ATAMVKPESH  300
NSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-48bHLH family protein