PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G08380
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33604.8 Da    PI: 9.8951
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G08380genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.2e-171150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+s r+ tf kR++g++KK +EL +LCd++++ ii+s+
  Ro06_G08380 11 ITNDSARKATFKKRKKGLMKKVSELTTLCDIDACAIIYSP 50
                 89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MTRKKVKLTY ITNDSARKAT FKKRKKGLMK KVSELTTLCD IDACAIIYSP YDSQPEVWPS  60
PLGVQRVLAQ FKTMPEMEQS KKMVNQESFL RQRISKTQEQ LKKQKKDNRE KEMTRVMFQS  120
LTGKSLQGLT LTDLNDLGWV IDQHLKEIHL RMKNIKEEAL KSQSQVQGAQ VVPAAADHRM  180
AAMKIGGEGS SSNMAMKSCG EGSSMQQAAL ERQAFDHMHN MEAMQLQMMQ MAAQKQQQNP  240
WFMDMMNAPP PPPHPDHHHH QHMGFTGEDM MLPFGDHNHS TMWPNPPPAG GFNFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTYITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-63M-type_MADS family protein