PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G08383

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 761aa MW: 80615 Da PI: 6.5585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G08383	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	434	480	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Ro06_G08383 434 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 480 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MVWENGQIMM QGQSSRARKS PTCNNLPSHT PKNRDRDVGN GTIGKMGKFG SVDSVLDEIP 60 LSVPSVEMGL SDDDDMLPWL NYALDEPLQH EYSHDFMPEL SGVTANEIST NSNLASINKR 120 SSSSQICGES NTNSTHGGAP LEQRNVSKLS SISAAEISRP RTGTSHLYQV SSQQSQASIP 180 SLRSRALDIV GGNTGSAPHH AVCKNSIQVS PAGGFPGIKM QKQNPPTPSH NNPTIVNFSH 240 FSRPATLAKA NLQNTGAVAG SSLVRVEKIG NKDKVSAATS SNPRESILIE SSCGLLKESN 300 SQCQDVMASS SADMKPTAAK PLEEPRAAKQ SEAAYQEDAS KNDDTNFNHI PCESAIRALP 360 DGERATEPVV ASSVCSGNSV ERASDDPTRA VKRKSRDTDD SECHSEDVEE ESVGVKKVAH 420 GRGMGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ 480 LQVQIMSMGA GLYMPQMMLP PGMQHMHAPR MAHFTHMGVG MGMGLGMGFG MGMPDMNGGS 540 SSYPMLQVPP MQGALFPGSP MSGNMAFNGM IGSNLQMFGL PGQGVPMPMQ RAPLVPLSGD 600 PFMKSAVGLN ACGAGGPVEN VESTPASGSK DSVQNMNSQV MQNTNANNSM NQTSTQCQAT 660 NEGFGQSALV QNNVQASDVS TSGANRSTNG KDLVLSRGAS LAGASFGWSS EALVSSPSFV 720 GSSKFRSDFA TSSMAFSNST DSVELSNSSG MFTASDTGSG I

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MVWENGQIMM QGQSSRARKS PTCNNLPSHT PKNRDRDVGN GTIGKMGKFG SVDSVLDEIP  60
LSVPSVEMGL SDDDDMLPWL NYALDEPLQH EYSHDFMPEL SGVTANEIST NSNLASINKR  120
SSSSQICGES NTNSTHGGAP LEQRNVSKLS SISAAEISRP RTGTSHLYQV SSQQSQASIP  180
SLRSRALDIV GGNTGSAPHH AVCKNSIQVS PAGGFPGIKM QKQNPPTPSH NNPTIVNFSH  240
FSRPATLAKA NLQNTGAVAG SSLVRVEKIG NKDKVSAATS SNPRESILIE SSCGLLKESN  300
SQCQDVMASS SADMKPTAAK PLEEPRAAKQ SEAAYQEDAS KNDDTNFNHI PCESAIRALP  360
DGERATEPVV ASSVCSGNSV ERASDDPTRA VKRKSRDTDD SECHSEDVEE ESVGVKKVAH  420
GRGMGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ  480
LQVQIMSMGA GLYMPQMMLP PGMQHMHAPR MAHFTHMGVG MGMGLGMGFG MGMPDMNGGS  540
SSYPMLQVPP MQGALFPGSP MSGNMAFNGM IGSNLQMFGL PGQGVPMPMQ RAPLVPLSGD  600
PFMKSAVGLN ACGAGGPVEN VESTPASGSK DSVQNMNSQV MQNTNANNSM NQTSTQCQAT  660
NEGFGQSALV QNNVQASDVS TSGANRSTNG KDLVLSRGAS LAGASFGWSS EALVSSPSFV  720
GSSKFRSDFA TSSMAFSNST DSVELSNSSG MFTASDTGSG I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	439	444	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-75	bHLH family protein