PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G08433
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 440aa    MW: 48034.3 Da    PI: 5.4144
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G08433genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.41.5e-114784373374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL++r+ +s+ ++y+ l++++ +  +s++ ++al+ ++ +sP++kfsh+taNq
  Ro06_G08433  78 GLLLQCAECVAMDNLHDASDLLPEISELSSPFGSSPERVGAYFAHALQTRVISSCLGTYSPLTTKTLTVAQSQRIFNALQSYNSISPLIKFSHFTANQ 175
                  58************************************************************************************************ PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  el++L v+ 
  Ro06_G08433 176 AIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFQPLEGKIGSITELSQLGVRA 269
                  *************************************************....9**************************988888999********* PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                   Ea++V++++  h l+d ++s       +L+ +  l+Pk++++veq+++h s+sFl rf+eal+yysalfd+l  +l  +s er++vE++l+g ei+n
  Ro06_G08433 270 SEATVVHWMH--HCLYDVTGSDLA----TLRSLSLLRPKLITIVEQDLSH-SGSFLGRFVEALHYYSALFDALGDGLTVDSLERHMVEQQLFGCEIRN 360
                  *********9..888877777777....**********************.899******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++a  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Ro06_G08433 361 ILAVGGPKRTGEVK-VERWGDELNRVGFSPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 437
                  ********998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MLQSLVPQSQ IGANPKNPSS SSSSMKTKRV DRDDADSAGE DPSFSNKRPN FSHEQTVEDR  60
EPPEQVAEGE SAGLKLLGLL LQCAECVAMD NLHDASDLLP EISELSSPFG SSPERVGAYF  120
AHALQTRVIS SCLGTYSPLT TKTLTVAQSQ RIFNALQSYN SISPLIKFSH FTANQAIFQA  180
LDGEDHVHVI DLDIMQGLQW PGLFHILASR SKKIRSMRIT GFGSSSELLE STGRRLADFA  240
SSLGLPFEFQ PLEGKIGSIT ELSQLGVRAS EATVVHWMHH CLYDVTGSDL ATLRSLSLLR  300
PKLITIVEQD LSHSGSFLGR FVEALHYYSA LFDALGDGLT VDSLERHMVE QQLFGCEIRN  360
ILAVGGPKRT GEVKVERWGD ELNRVGFSPV SLGGNPAAQA SLLLGMFPWK GYTLVEENGC  420
LKLGWKDLSL LTASAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein