PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09078
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 178aa    MW: 20512.8 Da    PI: 6.1203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09078genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.17.2e-2391531128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy..Wkatgkdkevlsk 95 
                  lp+G+rF+Pt++el+ +yL +kv+g +l + +++ e+d+y   e w+    ++++e+++yfF++ ++k+ +++r  r+t+sg   W+++ + k++   
  Ro06_G09078   9 LPVGYRFEPTEQELLLYYLYNKVNGAQLAC-NAVMECDLYGEeEAWRQ-LFHQTDERSLYFFTNLKNKTDNDSRIGRTTSSGCatWRNQNE-KPIRYD 103
                  799************************999.8899****987244543.2456788899*********************99766*98866.777775 PP

          NAM  96 ......kgel.......vglkktLvfy......kgrapkgektdWvmheyrl 128
                        +  +       +g k+t+ +       + ++ kg    Wvmhe+rl
  Ro06_G09078 104 gnvsdgD--DqrnemtlIGFKRTFSYVpkkkgsTSTRAKGGGHGWVMHEFRL 153
                  4555541..04566677**********87754434555666789******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MENAWNFELP VGYRFEPTEQ ELLLYYLYNK VNGAQLACNA VMECDLYGEE EAWRQLFHQT  60
DERSLYFFTN LKNKTDNDSR IGRTTSSGCA TWRNQNEKPI RYDGNVSDGD DQRNEMTLIG  120
FKRTFSYVPK KKGSTSTRAK GGGHGWVMHE FRLAGCLLNN DQIGYMLHNG VEEIRNGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-15NAC family protein