PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09163
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 256aa    MW: 29632.1 Da    PI: 5.2224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09163genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171661348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W+ eEd+ll ++++++G g W++I++  g++R++k+c++rw++yl
      Ro06_G09163 16 PWSMEEDQLLRKCIEKYGEGKWHRIPHLAGLNRCRKSCRLRWLNYL 61
                     7*******************************************97 PP
2Myb_DNA-binding42.91.2e-1367115147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      rg++ +eE +l++++ ++lG++   +W+++a++++ gRt++++k++w+ +
      Ro06_G09163  67 RGSFEQEEVDLIIKLQRLLGNRqvrSWSLVAARLP-GRTGNDVKNYWNCH 115
                      899********************************.***********977 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MSNTHCRDTT EMGGIPWSME EDQLLRKCIE KYGEGKWHRI PHLAGLNRCR KSCRLRWLNY  60
LRPNIKRGSF EQEEVDLIIK LQRLLGNRQV RSWSLVAARL PGRTGNDVKN YWNCHLSKKL  120
NAQETDDHEE KINHARNNNV QVIRPQPSKY ASSNSKMPKI SSTPEDQTCQ LALEEDSSSS  180
SMAMLCNIDK DQGQISNTPC VEEKHNGNND FMGDLAMVDL DQFEQVIDQY DEEIDNNKWV  240
WDDSILDMDL WSTDSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-54MYB family protein