PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09217

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 451aa MW: 49189.6 Da PI: 8.4666

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09217	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	4.1e-11	53	77	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p Ro06_G09217 53 EPDCSYYIRTGLCRFGATCRFNHPP 77 789********************97 PP
2	zf-CCCH	32.2	1.8e-10	112	131	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Ro06_G09217 112 YYLKTGTCKFGATCKFHHPR 131 8*****************96 PP
3	zf-CCCH	31.2	3.7e-10	155	177	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+ ++CkF+H++ Ro06_G09217 155 ECAYYLRTGQCKFASTCKFHHPQ 177 7********************97 PP
4	zf-CCCH	37.8	3.1e-12	312	338	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Ro06_G09217 312 PGQPECQFYMKTGDCKFGAVCRFHHPR 338 5789*********************96 PP
5	zf-CCCH	40.1	6.1e-13	358	384	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Ro06_G09217 358 PGEPLCIFYSRYGICKFGPSCKFDHPM 384 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MDFDAGIPMS RTAAAAATPV TDAPSLTQDA MWQMNLRSSE TMEPGPYPER AGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIFVKLV VYYLKTGTCK 120 FGATCKFHHP RDKAGIAGRV TLNILGYPLR PNEIECAYYL RTGQCKFAST CKFHHPQPTN 180 MMVSLSGSPV YPTVQSPTTP GQQSYPGGVT NWSRASFIPS PRWQGPSSYA PLIVPQGVVS 240 VPGWSAYSGQ VGSISSSESQ QQTVGNSQVY GTSRQREPEN SGSQGAFSPY RSGSIPVGFY 300 ALQRENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE 360 PLCIFYSRYG ICKFGPSCKF DHPMGIFTYN HSASSSADGP ARRLLGSTSG TTSLNLSSEG 420 LVEAGSAKPR RLSLSEPRQL PSADENIDTE D

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MDFDAGIPMS RTAAAAATPV TDAPSLTQDA MWQMNLRSSE TMEPGPYPER AGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACIFVKLV VYYLKTGTCK  120
FGATCKFHHP RDKAGIAGRV TLNILGYPLR PNEIECAYYL RTGQCKFAST CKFHHPQPTN  180
MMVSLSGSPV YPTVQSPTTP GQQSYPGGVT NWSRASFIPS PRWQGPSSYA PLIVPQGVVS  240
VPGWSAYSGQ VGSISSSESQ QQTVGNSQVY GTSRQREPEN SGSQGAFSPY RSGSIPVGFY  300
ALQRENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPAPDCVLS PIGLPLRPGE  360
PLCIFYSRYG ICKFGPSCKF DHPMGIFTYN HSASSSADGP ARRLLGSTSG TTSLNLSSEG  420
LVEAGSAKPR RLSLSEPRQL PSADENIDTE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-180	C3H family protein