PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09805

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 527aa MW: 59444.3 Da PI: 6.3803

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09805	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	254	300	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v+++G + W+ Ia++++ gR +kqc++rw+++l Ro06_G09805 254 KGQWTPQEDRLLVKLVARFGIKKWSQIAKMLN-GRVGKQCRERWHNHL 300 799***************************.***********97 PP
2	Myb_DNA-binding	56.1	8.3e-18	308	348	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd++l++a+kq G++ W+ Ia++++ gRt++ +k++w+ Ro06_G09805 308 MWSEEEDKILIEAHKQIGNR-WAEIAKRLP-GRTENTIKNHWN 348 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MELEANLRED NFPFLSALFS EMKPEPNPEE NLDLNSHFFH PPSPHDYKPN TLFQNSLHNF 60 DNHHHHSRGI DLNYSDQYHH HHQSSPLLGD HLGGSCTTIE GSSSNPFCGI DLTTIERFNP 120 FDACYNHQPD HPNHVNVFPY VPAAAVSLQD SQKAVMHGGW GDYDDVSPGC HQDPHHHQIP 180 AVQLPGAAQP ASCIQLPPLI NFQEIESAAT PGVMLPPADE YSSNITQSQN ELQKKKRLYM 240 KKASKQEREA MIIKGQWTPQ EDRLLVKLVA RFGIKKWSQI AKMLNGRVGK QCRERWHNHL 300 RPDIRKEMWS EEEDKILIEA HKQIGNRWAE IAKRLPGRTE NTIKNHWNAT KRKQYSKRKL 360 LNTSINLNND SSSLNNNPAN ESTVLANYIK SVVKSSAAAS AEKNKGKAAV VYAESSMQAQ 420 VYHPQFESTP FDAEWAAAGM NYDENNPDNY SVAATVGSSS SSSYLSCDRS MYPEFYGYED 480 GGRTVPMSED EARLSLEINS LMQGQAEVKK EIDLLEMICL GAFLDLI

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MELEANLRED NFPFLSALFS EMKPEPNPEE NLDLNSHFFH PPSPHDYKPN TLFQNSLHNF  60
DNHHHHSRGI DLNYSDQYHH HHQSSPLLGD HLGGSCTTIE GSSSNPFCGI DLTTIERFNP  120
FDACYNHQPD HPNHVNVFPY VPAAAVSLQD SQKAVMHGGW GDYDDVSPGC HQDPHHHQIP  180
AVQLPGAAQP ASCIQLPPLI NFQEIESAAT PGVMLPPADE YSSNITQSQN ELQKKKRLYM  240
KKASKQEREA MIIKGQWTPQ EDRLLVKLVA RFGIKKWSQI AKMLNGRVGK QCRERWHNHL  300
RPDIRKEMWS EEEDKILIEA HKQIGNRWAE IAKRLPGRTE NTIKNHWNAT KRKQYSKRKL  360
LNTSINLNND SSSLNNNPAN ESTVLANYIK SVVKSSAAAS AEKNKGKAAV VYAESSMQAQ  420
VYHPQFESTP FDAEWAAAGM NYDENNPDNY SVAATVGSSS SSSYLSCDRS MYPEFYGYED  480
GGRTVPMSED EARLSLEINS LMQGQAEVKK EIDLLEMICL GAFLDLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-62	MYB family protein