PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G09853

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 411aa MW: 45071.2 Da PI: 6.033

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G09853	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	66	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v ++G ++W++Iar + gR++k+c++rw + Ro06_G09853 66 RGPWSPEEDAVLSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 111 89****************************.*********985 PP
2	Myb_DNA-binding	55.5	1.3e-17	118	162	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd ++ a++ +G++ W++Iar ++ gRt++ +k++w++ Ro06_G09853 118 RKPFSEEEDRMIIAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 162 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
FDNGSCEEDA KAAVFFLRNI EHLVSVKWRG MEPEVAEDSA AAVIEIDASG DDVGSGKGKK 60 GKSKVRGPWS PEEDAVLSRL VSKFGARNWS LIARGISGRS GKSCRLRWCN QLDPILKRKP 120 FSEEEDRMII AAHAIHGNKW AAIARLLPGR TDNAIKNHWN STLRRRDPDR MKSESGNMVE 180 DVSFDKTKAS SEETLSNGDV NSFKSTEGRE VSSLEYMDDQ YEDKVSTDGQ YSHEAKEPRT 240 LFRPVARVSA FSVYNHLGGQ EPSTSSPRPI PVQGPSVQVG ELDVGICKLV EGVYGERSVP 300 DQCGHGCCCS QNGSNAQNSL LGPDFVEYSE PPSFPCFELA AIATDISNLA WLKSGLENSS 360 ARATSDAAGS IISHGSQGQL GHFEESRMNH LFRLEERKDR LMGMKTNVLS T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

FDNGSCEEDA KAAVFFLRNI EHLVSVKWRG MEPEVAEDSA AAVIEIDASG DDVGSGKGKK  60
GKSKVRGPWS PEEDAVLSRL VSKFGARNWS LIARGISGRS GKSCRLRWCN QLDPILKRKP  120
FSEEEDRMII AAHAIHGNKW AAIARLLPGR TDNAIKNHWN STLRRRDPDR MKSESGNMVE  180
DVSFDKTKAS SEETLSNGDV NSFKSTEGRE VSSLEYMDDQ YEDKVSTDGQ YSHEAKEPRT  240
LFRPVARVSA FSVYNHLGGQ EPSTSSPRPI PVQGPSVQVG ELDVGICKLV EGVYGERSVP  300
DQCGHGCCCS QNGSNAQNSL LGPDFVEYSE PPSFPCFELA AIATDISNLA WLKSGLENSS  360
ARATSDAAGS IISHGSQGQL GHFEESRMNH LFRLEERKDR LMGMKTNVLS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-110	MYB family protein