PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G09997
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 212aa    MW: 24512.4 Da    PI: 5.6353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G09997genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.3e-1382120848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++l+++++k+lG++ W++Ia +++ gRt+ ++k++w+++l
      Ro06_G09997  82 QHDLIIRLHKLLGNR-WSLIAGRLP-GRTDMEIKNYWNTHL 120
                      699************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MSSENQESTA TELTKPFEAA MNKRKERWTA QEDHNLAEAV RCCNSWCKKM DLNSVQSRAQ  60
SEWQELQAEM DELSKSQHQE RQHDLIIRLH KLLGNRWSLI AGRLPGRTDM EIKNYWNTHL  120
SKKIDKQSSN GANSIRQIST VDKKPSLKDD DQKVHVEMKQ EYSPIEVGTS ALLIKKEVMI  180
DQEDYHNTNI DVDGFFDFSN EAPLSLEIPQ IP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-26MYB family protein