PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11106
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25596 Da    PI: 9.088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11106genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.6e-203987149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k++e++s+r+vtfskR++g++ KA ELS+L++ae + i+fs +gk++ +
  Ro06_G11106 39 KKVEDTSRRYVTFSKRKKGLFNKAAELSILTGAETLAIVFSGKGKMFSF 87
                 6789******************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAAQNNNNPH PSPVAEPNDN NVLPPPVKKT KGRRRVDMKK VEDTSRRYVT FSKRKKGLFN  60
KAAELSILTG AETLAIVFSG KGKMFSFGGS SCDAVIQRYL AETNPEAAVE PVHHSKNDAA  120
NSELLVSTRQ QYFEAMRLLE EEKRRGEMIQ RRKEAAGVVG PAEFFLEEID RAVSWEDLER  180
LKGKAETRSQ EMIMHRQCSF TSLMDGRVVM AENYTNNNDN TISMNNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15383KRKKGLFNKAAELSILTGAETLAIVFSGKGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-16M-type_MADS family protein