PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11301
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 249aa    MW: 28404.5 Da    PI: 4.6118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19105154355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae+Aa a+++a+ +++g
  Ro06_G11301 105 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEDAALAYDQAAFAMRG 154
                  9*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDSSFFQNHN SEFSFDSCSS FNSLDSDLSW DMFAFDQNYN QLQLPAQLPF NENDSEEMLL  60
HGVLAQAGGG DSSDATSTPH HSKDHEEVNS ATEEESEPMK EEIAYRGVRR RPWGKYAAEI  120
RDSTRNGVRV WLGTFDTAED AALAYDQAAF AMRGTLAVLN FPADVVYKSL VDMKYGFEEG  180
SSPVLALKRR HSMKKKSSVN KKKKVVQKCD DDVEELRLEN MVVFEDLGAD YLEELLRWWM  240
DEGNKIRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188204KRRHSMKKKSSVNKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-51ERF family protein