PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11311

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 1324aa MW: 147217 Da PI: 6.1334

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Ro06_G11311 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.3	2.3e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Ro06_G11311 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1324 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RPVEQPQFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYANDLA GSELTEGSGA TRALLANYAQ TPRLGMTPLR TPQRTPAGKG 360 DAIMMEASNL AMLRESQTPL LGGENPQLHP SDFSGVTPRK KEIQTPNLML TPSTPGGAGL 420 TPRIGLTPSR DSFGMTPKGT PMRDELRINE DVDMHDSAKL EHRRQAELRK NLHLGLSKLP 480 QPKNEYQILM QPVPEDNEEP EEKIEEDMSD RIARERAEEE ARQQALLRKR SKVLQRELPR 540 PPAPSVESLR KSLLRTDEDK SKVVPPTSIE QANEMITKEL LSLLEHDNAK YPLDEKVDKR 600 KKKGAKRSLN GSTAAVPEIE DFEEDELKEA DSMIKEEVQY LRVAMGHEDK SLDEFVEVHK 660 TCMNDFMFFP KRNAYGASSI AGNEEKLEAL QSEFENVKKK LDDDIQKAVN LEKKVKVRTH 720 GYEMRAKETH WPKIEETFKQ LDTAEKELEC FRALQKQEQL AASHRINNLW EEVQKQKELE 780 RTLQKRYGGL LVELERVQHL RVKYIAQEQE QEEITARNGD IELTDSAADV TVVQSTDNPD 840 HTSASDELAA SHGETSNPQV DGMDLDAEKK DNMTVTSDVN VPNNMPSAAE GENDTPLQGT 900 SGEVSDTHLS SSDGINPSGV AAQNSVRNGD AVSGNVGDAL ATENITSTHV ADDQVVGAEV 960 AGDVTKMVTQ TVDLRSDTVT KPTETMRAAM AAAEVDDDVL GYDPTAFRLE TEMAKIMGKE 1020 AALFVPSGTM GNLISVLVHC DIRGSEVILG HNSHIHIYEN GGISTIGGVH PRTVKNNNDG 1080 TMDLDLIEAT IRDPRGELVY PTTRLICLEN SHANCGGRCL TVEYTDRVGE IAKKHGLKLH 1140 IDGARIFNAS VALGVPVDRL VQAADSVSVC LSKGVGAPVG SVIVGSASFI TKARRLRKTL 1200 GGGMRQVGIL CAGALVALHE NVAKLEGDHK KAKTLAEGLN QIKGLRVDTE TVETNILYIH 1260 ILEGSTITAE KLCKKLEEHG ILVMRKSSSS IRIVLHHQIS ASDVQYTVSC FQKALTGAPD 1320 ENGH

Sequence ? help Back to Top

Protein Sequence Length: 1324 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RPVEQPQFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYANDLA GSELTEGSGA TRALLANYAQ TPRLGMTPLR TPQRTPAGKG  360
DAIMMEASNL AMLRESQTPL LGGENPQLHP SDFSGVTPRK KEIQTPNLML TPSTPGGAGL  420
TPRIGLTPSR DSFGMTPKGT PMRDELRINE DVDMHDSAKL EHRRQAELRK NLHLGLSKLP  480
QPKNEYQILM QPVPEDNEEP EEKIEEDMSD RIARERAEEE ARQQALLRKR SKVLQRELPR  540
PPAPSVESLR KSLLRTDEDK SKVVPPTSIE QANEMITKEL LSLLEHDNAK YPLDEKVDKR  600
KKKGAKRSLN GSTAAVPEIE DFEEDELKEA DSMIKEEVQY LRVAMGHEDK SLDEFVEVHK  660
TCMNDFMFFP KRNAYGASSI AGNEEKLEAL QSEFENVKKK LDDDIQKAVN LEKKVKVRTH  720
GYEMRAKETH WPKIEETFKQ LDTAEKELEC FRALQKQEQL AASHRINNLW EEVQKQKELE  780
RTLQKRYGGL LVELERVQHL RVKYIAQEQE QEEITARNGD IELTDSAADV TVVQSTDNPD  840
HTSASDELAA SHGETSNPQV DGMDLDAEKK DNMTVTSDVN VPNNMPSAAE GENDTPLQGT  900
SGEVSDTHLS SSDGINPSGV AAQNSVRNGD AVSGNVGDAL ATENITSTHV ADDQVVGAEV  960
AGDVTKMVTQ TVDLRSDTVT KPTETMRAAM AAAEVDDDVL GYDPTAFRLE TEMAKIMGKE  1020
AALFVPSGTM GNLISVLVHC DIRGSEVILG HNSHIHIYEN GGISTIGGVH PRTVKNNNDG  1080
TMDLDLIEAT IRDPRGELVY PTTRLICLEN SHANCGGRCL TVEYTDRVGE IAKKHGLKLH  1140
IDGARIFNAS VALGVPVDRL VQAADSVSVC LSKGVGAPVG SVIVGSASFI TKARRLRKTL  1200
GGGMRQVGIL CAGALVALHE NVAKLEGDHK KAKTLAEGLN QIKGLRVDTE TVETNILYIH  1260
ILEGSTITAE KLCKKLEEHG ILVMRKSSSS IRIVLHHQIS ASDVQYTVSC FQKALTGAPD  1320
ENGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDNRQRKRKRK
2	200	205	RKRKRK
3	1194	1233	RRLRKTLGGGMRQVGILCAGALVALHENVAKLEGDHKKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein