PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11360
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29393.7 Da    PI: 6.6835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11360genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.3e-1698137342
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                  i n+s r  tf kR++g++KK +EL +LCd++++ ii+s+
  Ro06_G11360  98 ITNDSARRATFKKRQKGLMKKVSELTTLCDIDACAIIYSP 137
                  89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MLEVEKAGVV VLVDLVAVTQ ELLEGNGFER HRFEEVELGT GGGDAAVEGL NEGGRRRTER  60
DGAAVHGGLD GIAAALEVWR EEQGPQSALV FLVKLACITN DSARRATFKK RQKGLMKKVS  120
ELTTLCDIDA CAIIYSPYDS QPEVWPSPLG VQRVLEQFKT MPEMEQSKKM VNQETFLRQR  180
IAKAQEQLKK QKKENREKEI THVMFQSLTG KSLQGLTLTD LNDLGWTIEQ HLKGIHARIK  240
SIKEEALKTQ NEVEEAKVVP RCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-49M-type_MADS family protein