PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11372
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24496.2 Da    PI: 6.2529
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11372genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.8e-212977149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien+s rqvtfskR+ g++KKA+E+ + C +ev v++fs++gk + y
  Ro06_G11372 29 KKIENDSERQVTFSKRKSGVFKKASEMATICSTEVGVVVFSESGKPFSY 77
                 68******************************************96665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MGDIIALREF NLTMEGEKKT KGRQKIEIKK IENDSERQVT FSKRKSGVFK KASEMATICS  60
TEVGVVVFSE SGKPFSYGNP SIESVAHRFI QQQQNQNQND DAHFMIEAHH QARVDGIIRM  120
HNELESQLEV DRYRSKELQE RERAKASEDQ GGPGWWNQPI EGLDLAGLKQ MYASYERLHN  180
DLYSYLSNTT SAGTSSSGCT VGIPSALPPG FGYGSNDGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-35M-type_MADS family protein