PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11373
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22157.2 Da    PI: 9.8105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11373genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.4e-191563149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ien+  r vtfskRr g+ KK +EL +LC+aev v++fs++gk + y
  Ro06_G11373 15 KKIENEEDRLVTFSKRRSGVYKKSSELATLCGAEVGVVVFSTSGKPFSY 63
                 68******************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MESKKTRGRQ KIEIKKIENE EDRLVTFSKR RSGVYKKSSE LATLCGAEVG VVVFSTSGKP  60
FSYGHPSIES IANRFLSLQS SHQENGDVKT TGSCKQARYV EMLQRHKELE GKLKAEKVRE  120
EVLKQKERAR ASEEQGGLGW WQRPVQELDL EDLKQMLASF QRLHTTLSNH LTATGNKIEL  180
VRLFSRMNEI EEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-32M-type_MADS family protein