PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11574
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 319aa    MW: 34983.6 Da    PI: 7.219
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11574genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-113374147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g     k ++s+ qky
      Ro06_G11574 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-S---KTIRSHAQKY 74
                     789*****************77.*********.5...566*****99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MINPSSSTPQ SMGAASDGSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED  60
FVGSKTIRSH AQKYFLKVQK NGTTAHVPPP RPKRRSSHPY PQKASKNGCQ MLKILSALIL  120
TCSMGLTVLI PLQASLAYPS SMNAIASGYC PWDETSILIN DGSNQIVLSH EEFIDRQGTE  180
ELIMGYDVTD SADIGSKGVA RTSTCSSSGI GSSSRTLPSS EIPNQGIQAP VRHGIPDFAE  240
VYSFIGGVFD PDTQGHAQKL KEMDPINFET VLLLMRNLSI NLSSPDFEPI RKVLVSHDAN  300
MKTEAGGTVP SYRNNDLSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-101MYB_related family protein