PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11581
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 218aa    MW: 23438 Da    PI: 6.155
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB120.38.4e-382488165
        NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingd 65
                 vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrkting+
  Ro06_G11581 24 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGK 88
                 69*************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MADAPASPGG GSHDSGEHSP RSNVREQDRY LPIANISRIM KKALPANGKI AKDAKETVQE  60
CVSEFISFIT SEASDKCQRE KRKTINGKGG ESSSKKEVQP SPNAQVSHQG SFSQGEYIIV  120
LAVAFYSCEN NALSAVEYAN PTNDGSYARL GVDGLVESMD SQFYDKNECL LPAVDSSQDS  180
HCLDHLGIFV LGLGASVREN GSRVDAPRPN KLGSLIHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.17e-46NF-YB family protein