PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11615
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8668.36 Da    PI: 10.608
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11615genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.43.7e-391680670
         S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                 + +kG+nPGlivllvv gll++flvgny+lyvyaq+++PP+kkkPvskkklk+e+lkqGv++PGe
  Ro06_G11615 16 AGTKGFNPGLIVLLVVVGLLVTFLVGNYALYVYAQRTVPPKKKKPVSKKKLKKERLKQGVPAPGE 80
                 567*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MADEFADKVP PSFDAAGTKG FNPGLIVLLV VVGLLVTFLV GNYALYVYAQ RTVPPKKKKP  60
VSKKKLKKER LKQGVPAPGE