PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11621
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 115aa    MW: 13020.8 Da    PI: 7.6441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-054364223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C++Cg+ F ++  +  H++ H
  Ro06_G11621 43 ECHYCGREFENSQAYGGHQNAH 64
                 7*************99999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    
MSASASDHCT KQSSSSAMKL FGFLLTADHC EDGAAMKKSK KLECHYCGRE FENSQAYGGH  60
QNAHRKERKL AMMAKLELEE DHHQLLPPQL FPTAARVLPK DYEGHDHVID LRLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-13C2H2 family protein