PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11870
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 195aa    MW: 21795.9 Da    PI: 7.2589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11870genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36e-164899156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 + ykGVr+++  g+Wv+e r p     k+ r++lg+f  +e+Aa+a++ a+++l+ge
  Ro06_G11870 48 PVYKGVRQRS--GKWVCEMRQP---DlKKSRVWLGTFTCPEMAARAYDVAALALKGE 99
                 68****9865..******9998...6677*************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MVFREEPTAP SSSPSLLMNL GQTLTQMQNG VIKKRKAGRK KFTETRHPVY KGVRQRSGKW  60
VCEMRQPDLK KSRVWLGTFT CPEMAARAYD VAALALKGES AELNFPGEAN ASASSSSLPA  120
LTSTVNLDKV EVGSSRKGYV DEEELFNMPE LLDSMAEGLI VTPLAMQKGF NWDDYDFENA  180
VEFSLWRYGL LFLTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-31ERF family protein