PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G12352
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 345aa    MW: 39136.8 Da    PI: 9.6526
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G12352genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-145289340
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 i   sn qvtfskR  g++KKA+EL++L  +e+ +i+f
  Ro06_G12352 52 IPKRSNLQVTFSKRCSGLFKKASELCTLRRVEIVIIVF 89
                 667899******************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MFLYPLPTTT SATLVLSPCL LHSISSTTQV WTMLMTIKKP SKGRQKIAIA KIPKRSNLQV  60
TFSKRCSGLF KKASELCTLR RVEIVIIVFL RPTSPSLSAI LVLRPLSTAF LLQALHHFLV  120
VLNKLTIAGS VEHELNMQLT QTQGRLEAEK QQGEVLDKIS RDSERLSQCW WENPIEELGL  180
DELQILQAAM EELKKKVTEQ VIKMNGCAKA SVPFFMMNGI ELDHRLFERK FAEIMDLLDS  240
SRRLVRSAHC GVEIAIVVFS PSNKPFSFGY PSVEILIDRF LSLYPFSTQQ APYRRKANVE  300
HELSMQLTRA QEKDWVVVGG KTQLRNLDWM SSIEGCNGGA QDRRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-30M-type_MADS family protein