PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G12373

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 336aa MW: 37014.3 Da PI: 7.0317

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G12373	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00053	199	237	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +++ + +K + a++L +A+ YI+ Lq Ro06_G12373 199 RKEKLGDRITALHQIVSPF-----GKTDTASVLLEAIGYIRFLQ 237 6677888999999999987.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MMAGNPNWWS MHPPSSIFPS PYVLGSTNSL PQLNSFPDQH NLEPPQSWSQ LLLGGLSGED 60 QDSFGNLSHF PPKRLENWED HQQILIPQYP RVNPVVDSNI IKQEVNSQNT SNLCDGGHEE 120 FQAPYNNRPS WSPVQINMPV SSPRSCVTSL SSNNILDFSY NQKNQHADHS SECNSPPTGG 180 MCKKARVQPS SSQPPLKVRK EKLGDRITAL HQIVSPFGKT DTASVLLEAI GYIRFLQSQI 240 EALSSPYLGN ASKNMRNNPH SVQGERNCVF PEDPGQLLND NCSLKRKGAP NQAHQDYKAK 300 DLRSKGLCLV PVSCTQNVGG DINIGADYWA PAGSGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-69	bHLH family protein