PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G13057
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 300aa    MW: 31462.3 Da    PI: 9.5096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G13057genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-063861225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  Ro06_G13057 38 KSKPCTKFFSTAGCPFGESCHFLH 61
                 7789******************** PP
2zf-CCCH26.21.3e-08102127227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +     Ck+Gd+C+FaHg+
  Ro06_G13057 102 KTRLCNKYNSAEGCKFGDKCHFAHGE 127
                  8***********************96 PP
3zf-CCCH37.24.9e-12267291126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y+t+lC++fa+ GtC +G+rC+FaHg
  Ro06_G13057 267 YRTKLCDNFAK-GTCTFGERCHFAHG 291
                  89*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MMDTRKRGRH EAGGFHANGG FKKNKQELDS LSTGVGSKSK PCTKFFSTAG CPFGESCHFL  60
HYVPGGYNAV AQVMNLGPPP QSSRNLAGPP SNSNGSNAPS AKTRLCNKYN SAEGCKFGDK  120
CHFAHGEREL GKPVAQSYGH DDPRAMAPAL GRNWMEPGHA PLAGPASSFG ASSTAKISVD  180
ASLAGAIIGK GGVNSKHICR QTGAKLSIRD HESDPNLRNI ELEGTFEQIQ QASALVRELI  240
QSVLMSGPTK TPGGGGPGVP APPGSNYRTK LCDNFAKGTC TFGERCHFAH GAAELRKSGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-92C3H family protein