PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13101

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 521aa MW: 57954.6 Da PI: 10.1675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4e-10	236	276	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Ro06_G13101 236 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 276 788*************************9777777666554 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MTKSAKSDRS KHIVANSVVK KQKLITREKR TNLGRVSSGR SQQISKQTSL SFAWPRSRVE 60 HSTSSPRWLC KLWISSLERA TNLAVPNLSI RLQLSRACSK FMTDPQASAS RGPVYDQNKS 120 TSQALGAKDV QLGSLNKLLP QKELQPNLVS VSRSNHENWG ESNMADASPR TETSTDDTED 180 KNPMVTSLAS ILSLYTAFEC YLAAASFVIS IERNQMTGLL ASDSSDGSKE KPGDQKTLRR 240 LAQNREAARK SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQAHSMSGNG 300 ALAFDVEYAR WLEEHNRQIN ELRAAVNSHA GDTELRTVID NVIAHYDDIF RLKGTAAKAD 360 VFHILSGMWK TPAERCFMWI GGFRSSEILK LLVNQLEPLT EQQLMGIYNL QQSSQQAEDA 420 LSQGMEVLQQ SLAETLASGS PGPSGTSGNV ANYMGQMAMA MGKLGTLEGF LRQADNLRQQ 480 TLQQMHCILT TRQSARALLA INDYFSRLRA LSSLWLARPR E

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MTKSAKSDRS KHIVANSVVK KQKLITREKR TNLGRVSSGR SQQISKQTSL SFAWPRSRVE  60
HSTSSPRWLC KLWISSLERA TNLAVPNLSI RLQLSRACSK FMTDPQASAS RGPVYDQNKS  120
TSQALGAKDV QLGSLNKLLP QKELQPNLVS VSRSNHENWG ESNMADASPR TETSTDDTED  180
KNPMVTSLAS ILSLYTAFEC YLAAASFVIS IERNQMTGLL ASDSSDGSKE KPGDQKTLRR  240
LAQNREAARK SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQAHSMSGNG  300
ALAFDVEYAR WLEEHNRQIN ELRAAVNSHA GDTELRTVID NVIAHYDDIF RLKGTAAKAD  360
VFHILSGMWK TPAERCFMWI GGFRSSEILK LLVNQLEPLT EQQLMGIYNL QQSSQQAEDA  420
LSQGMEVLQQ SLAETLASGS PGPSGTSGNV ANYMGQMAMA MGKLGTLEGF LRQADNLRQQ  480
TLQQMHCILT TRQSARALLA INDYFSRLRA LSSLWLARPR E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.4	1e-151	bZIP family protein